Axelson-Fisk, M. (2010). Comparative Gene Finding: Models, Algorithms and Implementation. Springer Verlag. [Book]

Selected Publications

Note that up to 2005 I've published under my maiden name, Alexandersson.

  1. Axelson-Fisk, M. (2010). Comparative Gene Finding: Models, Algorithms and Implementation. Springer Verlag. [Book]
  2. Axelson-Fisk, M., Häggström, O. (2009). Conditional percolation on one-dimensional lattices. Adv. Appl. Prob. 41(4), pp. 1102-1122. [Abstract] [Full PDF]
  3. Axelson-Fisk, M., Häggström, O. (2009). Biased random walk in a one-dimensional percolation model. Stoch. Proc. Appl. 119(10), pp. 3395-3415. [Full PDF]
  4. Axelson-Fisk, M., Sunnerhagen, P. (2005). Gene finding in fungal genomes. In: Topics in Current Genetics: Comparative genomics using fungi as models. Springer Verlag. Editors: Sunnerhagen, P. and Piskur, J.
  5. Alexandersson, M., Bray, N., Pachter, L. (2005). Pair hidden Markov models. Special review in Encyklopedia of Genetics, Genomics, Proteomics and Bioinformatics. John Wiley & Sons, Ltd. Editors: Jorde, L.B., Little, P., Dunn, M. and Subramanian, S.
  6. Alexandersson, M. (2005). The Cell Cycle. In: Branching Processes: Variation, Growth, and Extinction of Populations. Cambridge University Press. Editors: P. Haccou, P. Jagers, V. Vatutin et al.
  7. Lang, T., Alexandersson, M., Hansson, G.C. and Samuelsson, T. (2004). Bioinformatic identification of polymerizing and transmembrane mucins in the puffer fish Fugu rubripes. Glycobiology 14(6), pp. 521-527. [Abstract] [Full PDF]
  8. Rat Genome Sequencing Consortium. (2004). Evolution of the Mammalian Genome: Sequence of the Genome of the Brown Norway Rat. Nature 428(6982), pp. 493-521. [Abstract] [Full PDF]
  9. Dewey, C., Wu, J.Q., Cawley, S., Alexandersson, M., Gibbs, R. and Pachter, L. (2004). Accurate Identification of Novel Human Genes Through Simultaneous Gene Prediction in Human, Mouse and Rat. Genome Res. 14(4), pp. 661-664. [Abstract] [Full text]
  10. Lam, F., Alexandersson, M. and Pachter, L. (2003). Picking Alignments from (Steiner) Trees. J. Comp. Bio. 10(3-4), pp. 509-520. [Abstract] [Full PDF]
  11. Alexandersson, M. (2003). Gene Finding, Alignment and Generalized Pair Hidden Markov Models. Proceedings of the 54th ISI session, Berlin.
  12. Cawley, S., Pachter, L. and Alexandersson, M. (2003). SLAM web server for comparative gene finding and alignment. Nucl. Ac. Res. 31(13), pp. 3507-09. [Abstract] [Full text]
  13. Alexandersson, M., Cawley, S. and Pachter, L. (2003). SLAM: Cross-species Gene Finding and Alignment with a Generalized Pair Hidden Markov Model. Genome Res. 13(3), pp. 496-502. [Abstract] [Full text]
  14. Waterston, R.H., Lindblad-Toh, K., Birney, E., Rogers, J., Abril, J.F., Agarwal, P., Agarwala, R., Ainscough, R., Alexandersson, M., An, P. et al. (2002). Initial sequencing and comparative analysis of the mouse genome. Nature 420, pp. 520-562. [Abstract] [Full text]
  15. Pachter, L., Alexandersson, M. and Cawley, S. (2002) Applications of Generalized Pair Hidden Markov Models to Alignment and Gene Finding Problems. J. Comp. Bio. 9(2), pp. 389-399. [Abstract] [Full PDF]
  16. Alexandersson, M. (2001). Existence of the Stable Birth Type Distribution in a General Branching Process Cell Cycle Model with Unequal Cell Division. J. Appl. Prob. 38(3), pp. 685-695. [Abstract] [Full PDF]
  17. Alexandersson, M. (1998). An Application of General Branching Processes to a Cell Cycle Model with Two Uncoupled Subcycles and Unequal Cell Division. Int. J.. Appl. Math. and Comp. Sci. 10(1), pp. 131-147. [Abstract]

  • Full CV: [PS] [PDF]