# Statistical Image Analysis

(7.5 HEC-points)
Mathematical Statistics
(Matematisk statistik, Chalmers/GU)

Examiner: Mats Rudemo

## Course material 2009

• Image analysis and spatial statistics (called IASS in Schedule), notes by Mats Rudemo. Will become available from the Internet (see Notes below).
• Computer exercises (called CE 1 - 4) by Mats Kvarnström. Available from the Internet (see Computer exercises below).
• Some papers, in particular the master thesis by Mattias Andersson (called WACC in Schedule) will be used in Lectures 3 and 4. The papers are available from the Internet (see Literature below).
• Highly useful is also Glasbey and Horgan (1995), currently available on the Internet (see Literature below).
Notes
Computer exercises
Literature
Projects
Images
Data
Computer programmes
Exam 2000
Exam 2001 with solutions
Exam 2002
Exam 2003 with solutions
Exams 2004
Exam 2005 with solutions

### Examination

Examination consists of a written examination and approval of a project report, including giving a seminar on the project. The written examination counts 50% and the project counts 50%.

### Schedule

The schedule below is preliminary and may be somewhat changed.
 Thursday, August 20, Written examination: Choose one of the following two possibilities: 8.30-12.30. Written examination (Re-exam), Civil Engineering Wednesday, May 27, 8.30-12.30 in house M, or house (hus V). Precise information on room will be Thursday, May 28, 8.30-12.30 in "Hörsalslängan" available at house entrance. Literature and notes may be brought for Precise information on room will be available at house entrance. the examination. All types of pocket calculators are allowed but not Literature and notes may be brought for the examination. computers. All types of pocket calculators are allowed but not computers. (Re-exam 20 August 2009, see below) Mon 16 Mar Lect. 10.00-11.45 MVF26 IASS pp 1-20, examples of images, image filtering. Mon 16 Mar Exerc. 13.15-15 MVF25 CE - 1 Wed 18 Mar Lect. 10.00-11.45 MVF26 IASS pp 21-26, histograms, thresholding, segmentation, morphological operations, object feature measurements. Wed 18 Mar Exerc. 13.15-15 MVF25 CE - 1 Mon 23 Mar Lect. 10.00-11.45 MVF26 IASS Chapter 2, pattern recognition. WACC. Mon 23 Mar Exerc. 13.15-15 MVF25 CE - 2 Wed 25 Mar Lect. 10.00-11.45 MVF26 IASS Chapter 2, pattern recognition. WACC. Wed 25 Mar Exerc. 13.15-15 MVF25 CE - 2 Mon 30 Mar Lect. 10.00-11.45 MVF26 IASS Chapter 3, statistical image modelling. Mon 30 Mar Exerc. 13.15-15 MVF25 CE - 3 Wed 1 Apr Lect. 10.00-11.45 MVF26 IASS Chapter 3, statistical image modelling. IASS Chapter 4, spatial random processes. Wed 1 Apr Exerc. 13.15-15 MVF25 CE - 3 Mon 20 Apr Lect. 10.00-11.45 MVF26 IASS Chapter 5, point processes. Jain et al. (1999) "Data clustering: a review" Mon 20 Apr Exerc. 13.15-15 MVF25 CE - 4 Wen 22 Apr Lect. 10.00-11.45 MVF26 IASS Chapter 6, marked point processes. Wen 22 Apr Exerc. 13.15-15 MVF25 CE - 4. Project work Mon 27 Apr Lect. 10.00-11.45 MVF26 IASS Chapter 7. Warping and matching. Mon 27 Apr Exerc. 13.15-15 MVF25 CE - 4. Project work Wed 29 Apr 10.00-11.45 OBS OBS! NO LECTURE Wed 29 Apr 13.15-15 OBS OBS! NO EXERCISE Mon 4 May Lect. 10.00-11.45 MVF26 IASS Chapter 8. Analysis of microarray data Huber et al. (2003), Ekstrom et al. (2004, 2005) Mon 4 May Exerc. 13.15-15 MVF25 Project work Wed 6 May Lect. 10.00-11.45 MVF26 IASS Chapter 9. 2D electrophoresis. Gustafsson et al. (2002, 2003) IASS Chapter 10. Aerial photographs of forests, Dralle and Rudemo (1997), Larsson and Rudemo (1998) Wed 6 May Exerc. 13.15-15 MVF25 Project work Mon 11 May Lect. 10.00-11.45 MVF26 IASS Chapter 11. Estimation of diffusion coefficients Mon 11 May Exerc. 13.15-15 MVF25 Project work Wed 13 May Seminars 10.00-11.45 MVF26 Problems from earlier examination, March 2004. Wed 13 May 13.15-15 MVF25 Project work Sun 17 May 16.00 Delivery of preliminary version of project reports by e-mail. Mon 18 May Seminars 10.00-11.45 MVF26 Seminars on projects Mon 18 May Lect. 13.15-15 MVF21 Seminars on projects and Problems from earlier examination, August 2004. Wed 20 May Seminars 10.00-11.45 MVF26 Seminars on projects Wed 20 May Lect. 13.15-15 MVF25 Project work Wednesday June 3 before 17.00 H3024 Delivery of project reports. Please deliver one paper version in room H3024 and also an electronic version to rudemo@chalmers.se