Statistical Image Analysis

(7.5 HEC-points)
Mathematical Statistics
(Matematisk statistik, Chalmers/GU)

Examiner: Mats Rudemo

Plan for 2017

First and introductory lecture: Monday March 20, 2017, 10.00-11.45 in MVF26.

Course material 2017

Statistics of Imaging (called SoI in Schedule), notes by Mats Rudemo. Will become available from the Internet (see Notes below).
Computer exercises (called CE 1 - 5) by Mats Kvarnström and Marco Longfils. Available from the Internet (see Computer exercises below).
Some papers, in particular the master thesis by Mattias Andersson (called WACC in Schedule) will be used in Lectures 3 and 4. The papers are available from the Internet (see Literature below).
Highly useful is also Glasbey and Horgan (1995), currently available on the Internet (see Literature below).

OBS Guest lecture Monday March 27 10.00-10.45 by Johan Ling [johan.ling@archaeology.gu.se] on Rock Art, compare project 174 and the paper Johan Ling & Ulf Bertilsson (2015) Biography of the Fossum Panel available from the course literature page Notes
Computer exercises
Literature
Projects
Images
Data
Computer programmes
Exam 2000
Exam 2001 with solutions
Exam 2002
Exam 2003 with solutions
Exams 2004
Exam 2005 with solutions
Exam 2010

Examination

Examination consists of a written examination and approval of a project report, including giving a seminar on the project. The written examination counts 50% and the project counts 50%.

Note the guest lecture

The course project should preferably be decided on Monday April 3 and not later than Wednesday April 5. Note that there is no teaching in week 15 and 16 from April 10 to April 21. Note also seminars on projects May 22 and 24. Written examination May 31 and delivery of project report before June 1 at 12.00, see details in Schedule below.

Schedule

The schedule below is preliminary and may be changed. 16.00

Written examination Wednesday, May 31, 8.30-12.30 place to be decided. Precise information on room will be available at house entrance. Literature and notes may be brought for the examination. Neither pocket calculators nor computers are allowed at the exam. (Re-exam in August 2017, see below)
Mon 20 Mar Lect. 10.00-11.45	MVF26	SoI pp 1-20, examples of images, image filtering.
Mon 20 Mar Exerc. 13.15-15	MVF25	CE - 1
Wed 22 Mar Lect. 10.00-11.45	MVF26	SoI pp 21-26, histograms, thresholding, segmentation, morphological operations, object feature measurements.
Wed 22 Mar Exerc. 13.15-15	MVF25	CE - 1
Mon 27 Mar Lect. 10.00-11.45	MVF26	Guest Lecture by Johan Ling. SoI Chapter 2, pattern recognition. WACC.
Mon 27 Mar Exerc. 13.15-15	MVF25	CE - 2
Wed 29 Mar Lect. 10.00-11.45	MVF26	SoI Chapter 2, pattern recognition. WACC.
Wed 29 Mar Exerc. 13.15-15	MVF25	CE - 2
Mon 3 Apr Lect. 10.00-11.45	MVF26	SoI Chapter 3, statistical image modelling.
Mon 3 Apr Exerc. 13.15-15	MVF25	CE - 3
Wed 55 Apr Lect. 10.00-11.45	MVF26	SoI Chapter 3, statistical image modelling. SoI Chapter 4, spatial random processes.
Wed 5 Apr Exerc. 13.15-15	MVF25	CE - 3
Mon 24 Apr Lect. 10.00-11.45	MVF26	SoI Chapter 5, point processes. Jain et al. (1999) "Data clustering: a review"
Mon 24 Apr Exerc. 13.15-15	MVF25	CE - 4 and Advice on projects
Wed 26 Apr Lect. 10.00-11.45	MVF26	SoI Chapter 6, marked point processes. SoI Chapter 7. Warping and matching. Glasbey and Mardia (1998,2001)
Wed 26 Apr Exerc. 13.15-15	MVF25	CE - 4 and Advice on projects
Wed 3 May Lect. 10.00-11.45	MVF26	SoI Chapter 8. Analysis of microarray data Huber et al. (2003), Ekstrom et al. (2004, 2005) SoI Chapter 9. 2D electrophoresis. Gustafsson et al. (2002, 2003)
Wed 3 May Exerc. 13.15-15	MV25	CE-5 and Advice on projects
Mon 8 May Lect. 10.00-11.45	MVF26	SoI Chapter 10. Aerial photographs of forests, Dralle and Rudemo (1997) Larsson and Rudemo (1998)
Mon 8 May Exerc. 13.15-15	H3018	Advice on projects in H3018
Wed 10 May Lect. 10.00-11.45	MVF26	SoI Chapter 10. Aerial photographs of forests, SoI Chapter 11. Estimation of diffusion coefficients
Wed 10 May Exerc. 13.15-15	H3018	Advice on projects in H3018
Mon 15 May Lect. 10.00-11.45	MVF26	Problems from earlier examination, March 2004.
Mon 15 May Exerc. 13.15-15	H3018	Advice on projects in H3018
Wed 17 May Lect. 10.00-11.45	MVF26	Problems from earlier examination, August 2004.
Wed 17 May Exerc. 13.15-15	H3018	Advice on projects in H3018
.	Delivery of preliminary version of project reports by e-mail.
Mon 22 May Seminars 10.00-11.45	MVF26	Seminars on projects
Mon 22 May Seminars 10.00-11.45	MVF31	Seminars on projects
Wed 24 May Seminars 10.00-11.45	MVF26	Seminars on projects
Wed 24 May Exerc. 13.15-15	H3018	Advice on projects in H3018


Fri June 2 before 12.00	H3024	Delivery of project reports. Please deliver one paper version in room H3024 and also an electronic version to rudemo@chalmers.se and to longfils@chalmers.se

Wednesday, August 23, 14.00-18. Written examination (Re-exam). House SB, precise information on room will be available at house entrance. Literature and notes may be brought for the examination. Neither pocket calculators nor computers are allowed at the exam.