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Research interests
- Probability theory and stochastic models
- Hidden Markov Models (HMMs)
- Generalized Pair Hidden Markov Models (GPHMMs)
- Conditional Random Fields
- Percolation on one-dimensional lattices
- Branching processes
- Algorithm development and software implementation
- Bioinformatics and comparative genomics
- Biological sequence analysis
- Cross-species gene finding
- Protein domain prediction
- Promoter analysis and motif-prediction
Some ongoing projects
- Cross-species gene finding using GPHMMs
- Conditional random fields applied to comparative genomics
- Comparative marine genomics
- Promoter analysis of herpes simplex virus 1 (HSV-1)
- Driver maneuver prediction using HMMs
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