Mats Rudemo

Professor

Teaching

Statistical Image Analysis
The Elements of Statistical Learning, study group March-May 2010


Research interests

Microarrays, 2D electrophoresis, image analysis, spatial statistics, particle tracking, precision forestry, statistics in biology and engineering.

Selected papers in reverse chronological order

• Jonasson JK, Hagman J, Lorén N, Bernin D, Nydén M & Rudemo M (2010) Pixel-based analysis of FRAP data with a general initial bleaching profile. Journal of Microscopy to appear
• Morant M, Ekstrøm C, Ulvskov P, Kristensen C, Rudemo M, Olsen CE, Hansen J, Jørgensen K, Jørgensen B, Møller BL & Bak S (2010) Metabolomic, transcriptional, hormonal, and signaling cross-talk in superroot2. Molecular Plant 3, 192-211.
• Guillot G, Lorén N & Rudemo M (2009) Spatial prediction of weed intensities from exact count data and image-based estimates. Journal of the Royal Statistical Society: Series C (Applied Statistics) 58, 525-542.
• Jernås M, Olsson B, Sjöholm K, Sjögren A, Rudemo M, Nellgård B, Carlsson L & Sjöström C (2009) Changes in adipose tissue gene expression and plasma levels of adipokines and acute-phase proteins in patients with critical illness. Metabolism 58, 102-108.
• Jonasson JK, Lorén N, Olofsson P, Nydén M & Rudemo M (2008) A pixel-based likelihood framework for analysis of fluorescence recovery after photobleaching data. Journal of Microscopy 232, 260-269
• Åstrand M, Mostad P & Rudemo M (2008) Empirical Bayes models for multiple probe type microarrays at the probe level. BMC Bioinformatics 9:156.
• Guillot G, Olsson M, Benson M, Rudemo M (2007) Discrimination and scoring using small sets of genes for two-sample microarray data. Mathematical Biosciences 205, 195-203.
• Benson M, Hov DA, Clancy T, Hovig E, Rudemo M & Cardell LO (2007) Connectivity can be used to identify key genes in DNA microarray data: a study based on gene expression in nasal polyps before and after treatment with glucocorticoids. Acta Otolaryngolica 127, 1074-1079.
• Sjögren A, Kristiansson E, Rudemo M & Nerman O (2007) Weighted analysis of general microarray experiments. BMC Bioinformatics 8:387.
• Åstrand M, Mostad P & Rudemo M (2007) Improved covariance matrix estimators for weighted analysis of microarray data. Journal of Computational Biology 14, 1353-1367.
• Nisslert R, Kvarnström M, Lorén N, Nydén M & Rudemo M (2007) Identification of the three-dimensional gel microstructure from transmission electron micrographs. Journal of Microscopy 225, 10-21.
• Benson M, Carlsson L, Guillot G, Jernås M, Langston MA, Rudemo M & Andersson BA (2006) A network-based analysis of allergen-challenged CD4+T cells from patients with allergic rhinitis. Genes and Immunity 7, 514-521.
• Olsson M, Broberg A, Jernås M, Carlsson L, Rudemo M, Suurküla M, Svensson P-A & Benson M (2006) Increased expression of aquaporin 3 in atopic eczema. Allergy 61, 1132-1137.
• Jernås M, Palming J, Sjöholm K, Jennische E, Svensson P-A, Gabrielsson BG, Levin M, Sjögren A, Rudemo M, Lystig TC, Carlsson B, Carlsson LMS, Lönn M (2006) Separation of human adipocytes by size - hypertrophic fat cells display distinct gene expression. The FASEB Journal 20, 1540-1542.
• Kristiansson E, Sjögren A, Rudemo M & Nerman O (2006) Quality optimised analysis of general paired microarray experiments. Statistical Applications in Genetics and Molecular Biology 4, No.1, Article 30.
• Kristiansson E, Sjögren A, Rudemo M & Nerman O (2005) Weighted analysis of paired microarray experiments. Statistical Applications in Genetics and Molecular Biology 4, No.1, Article 30.
• Gabrielsson BG, Olofsson LE, Sjögren A, Jernås M, Elander A, Lönn M, Rudemo M & Carlsson LMS (2005) Evaluation of reference genes for studies of gene expression in human adipose tissue. Obesity Research 13, 649-652.
• Ekstrøm CT, Bak S & Rudemo M (2005) Pixel-level signal modelling with spatial correlation for two-colour microarrays. Statistical Applications in Genetics and Molecular Biology 4, No.1, Article 6.
• Ekstrøm CT, Bak S, Kristensen C & Rudemo M (2004) Spot shape modelling and data transformation for microarrays. Bioinformatics 20, 2270-2278.
• Benson M, Olsson M, Rudemo M, Wennergren G & Cardell LO (2004) Pros and cons of microarray technology in allergy research. Clinical and Experimental Allergy 34, 1001-1006.
• Gustafsson, J.S., Caesar, R., Glasbey, C.A., Blomberg, A. & Rudemo, M. (2004) Statistical exploration of variation in quantitative two-dimensional gel electrophoresis data. Proteomics 4, 3791-3799.
• Larsen, M. & Rudemo, M. (2004) Approximate Bayesian estimation of a 3D point pattern from multiple views. Pattern Recognition Letters 25, 1359-1368.
• Benson M, Svensson PA, Adner M, Carén H, Carlsson B, Carlsson LMS, Martinsson T, Rudemo M & Cardell LO (2004) DNA microarray analysis of chromosomal susceptibility regions to identify candidate genes for allergic disease: a pilot study. Acta Oto-Laryngologica 124, 813-819.
• Benson M, Carlsson LMS, Adner M, Jernås M, Rudemo M, Sjögren A, Svensson PA, Uddman R and Cardell LO (2004) Gene profiling reveals increased expression of uteroglobin and other anti-inflammatory genes in glucocorticoid-treated nasal polyps. Journal of Allergy and Clinical Immunology 113, 1137-1143.
• Månsson, M. & Rudemo, M. (2002) Random patterns of non-overlapping convex grains. Adv. Appl. Probability 34, 718-738. (Report 2001:53, Mathematical Statistics, Chalmers University of Technology. Gzipped PS).
• Gustafsson, J.S., Blomberg, A. & Rudemo, M. (2001) Warping two-dimensional electrophoresis gel images to correct for geometric distortions of the spot pattern. Electrophoresis 23, 1731-1744. (Report 2001:73, Mathematical Statistics, Chalmers University of Technology. Gzipped PS).
• Lund, J. & Rudemo, M. (2000) Models for point processes observed with noise. Biometrika 87, 235-249.
• Larsen, M. & Rudemo, M. (1998) Optimizing templates for finding trees in aerial photographs. Pattern Recognition Letters 19, 1153-1162.
• Christensen, J. & Rudemo, M., (1998) Multiple change-point analysis applied to the monitoring of salmonella prevalence in Danish pigs and pork. Preventive Veterinary Medicine 36, 131-143.
• Dralle, K. & Rudemo, M. (1997) Automatic estimation of individual tree positions from aerial photos. Canadian J. Forest Research 27, 1728-1736.
• Andreasen, C., Rudemo, M. & Sevestre, S. (1997) Assessment of weed density at an early stage by use of image processing. Weed Research 37, 5-18.
• Dralle, K. & Rudemo, M. (1996) Stem number estimation by kernel smoothing of aerial photos. Canadian J. Forest Research 26, 1228-1236.
• Christensen, J. & Rudemo, M., (1996) Multiple change-point analysis of disease incidence rates. Preventive Veterinary Medicine 26, 53-76.

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